Dataset Mocks

mocks for dataset

Mock

AnnData

---

source

MockSingleCell

 MockSingleCell (label_col:Optional[str]='barcode',
                 condition_col:Optional[str]='condition',
                 norm_str:Optional[str]='magic',
                 n_genes:Optional[int]=100, n_points:Optional[int]=1000,
                 emb_name:Optional[str]='phate', emb_dims:Optional[int]=3,
                 n_conditions:Optional[int]=4, hvg_ratio:Optional[int]=5,
                 seed:Optional[int]=3, set_index:Optional[bool]=False)

mock = MockSingleCell()
mock.adata

AnnData object with n_obs × n_vars = 1000 × 100
    obs: 'barcodes', 'conditions'
    var: 'is_hvg'
    obsm: 'X_phate'
    layers: 'X_magic'