FluentBio PBMC

FluentBio PBMC dataset.

Constants

FluentBio Download

---

source

FluentBioPBMC2023

 FluentBioPBMC2023 (data_dir:str='/home/runner/Downloads/fluentbio_pbmc')

data_dir = os.path.expanduser('~/Downloads/fluentbio_pbmc')
fb_pmbc = FluentBioPBMC2023(data_dir=data_dir)

fb_pmbc.prepare()

Archiver

from iza.utils import ArchiveDownloader
from iza.static import AMAZON_BUCKET_FLUENTBIO

downloader = ArchiveDownloader(
    rootdir = AMAZON_BUCKET_FLUENTBIO,
    archive = 'public-datasets/pbmc/',
    entries = ['combined.html', 'filtered_matrix.tar.gz'],
    savedir = '~/Downloads/test',  extract=True, cleanup=True
)
downloader.execute()